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added MBAA presentation from Tim Lozen to Secondary Metabolites section
====Secondary Metabolites====
Both primary and secondary metabolites play a large role in the flavor and aroma profile of wort fermented with ''Lactobacillus''. Secondary metabolites are compounds that are not directly related to the growth of an organism, but often assist with survival <ref>[http://www.ncbi.nlm.nih.gov/pubmed/11036689 The natural functions of secondary metabolites. Demain AL, Fang A. 2000.]</ref>. These secondary metabolites are produced by the pathways mentioned above, and different strains probably regulate the enzymes involved in various pathways differently and produce different secondary metabolites <ref>Private correspondence with Richard Preiss from Dan Pixley. 12/29/2015.</ref>. Thus, different species and strains can produce a wide variety of flavors and aromas (compare this to food grade lactic acid in which none of these secondary metabolites exist). These secondary metabolite are the result of carbohydrate fermentation and amino acid metabolism <ref name="peyer_review"></ref>. Different species can have varying ranges of flavor intensities, especially citrus flavor, which one study that soured wort and then fermented with US-05 two days later (not kettle soured) reported was higher for ''L. plantarum'', ''L. alimentarius'', ''L. brevis'', and ''L. buchneri'' versus ''L. rhamnosus''. Vinuous, malty, and sour flavors were also reported to vary in intensity based on species. ''L. buchneri'' was reported in the study to be the most vinuous, followed by (in descending order of intensity) ''L. brevis'', ''L. plantarum'', and ''L. alimentarius''. The sour flavor was reported highest for ''L. plantarum'' and ''L. alimentarius'', followed by (in descending order of intensity) ''L. brevis'', ''L. buchneri'', and finally ''L. rhamnosus''. ''L. rhamnosus'' had the most raspberry flavor, while the other species had a similar level of moderate raspberry flavor. All of the species tested had similar levels of apple flavor (moderate), acetic flavor (low), butyric (very low to absent, even though the fermenting vessels were never purged of oxygen), bitter aftertaste (low), and yeasty (low) <ref name="Tenhovirta_masters" />. An in-house experiment at Bells Brewery by Timothy Lozen demonstrated similar flavor differences in wort soured with a selection of different strains: ''L. brevis'' from Bells Brewery, ''L. casei'' (White Labs), ''L. buchneri'' (White Labs), ''L. delbruekii'' subsp. ''bulgarius'' (ATCC #11842), ''L. plantarum'' (Goodbelly), and ''L. rossiae'' (White Labs). The wort soured with ''L. bucherni'' was the most preferred with a score of 5.9, followed closely by ''L. casei'' which scored 5.3, ''L. brevis'' wich scored 4.9, ''L. plantarum'' which scored 4.6, and ''L. rossiae'' which scored 4.3. The ''L. delbruekii'' subsp. ''bulgarius'' scored lowest on preference with a score of 1.6, and was characterized as "cheesy/pukey and funky". ''L. casei'' was characterized as the most sour, while ''L. buchneri'' was characterized as the most citrusy and ''L. plantarum'' was characterized as the most fruity. The different strains also produced a range of titratable acidity and diacetyl with ''L. casei'' producing the most and ''L. delbruekii'' subsp. ''bulgarius'' the lowest titratable acidity and the most diacetyl. ''L buchneri'' produced the most alcohol at 0.64% ABV <ref name="lozen_2017">[https://www.mbaa.com/meetings/archive/2017/proceedings/Pages/92.aspx Timothy Lozen. "A comparison of selected lactic acid bacteria for use in the production of sour wort and beer." Presentation by Bells Brewery for the 2017 Master Brewers Conference. 2017.]</ref>. See also [https://www.masterbrewerspodcast.com/085 MBAA podcast #85 with Tim Lozen].
Another study showed that ''L. plantarum'' produced significantly more diacetyl, acetoin (yogurt-like flavor), and acetaldehyde than ''L. reuteri'' and ''L. brevis''. These three compounds were associated with dairy-related notes of "buttery", "lactic", and "yogurt" flavors identified during sensory testing <ref name="Peyer"></ref>. Some LAB can release these compounds through the catabolism of citric acid, which is found in wort. Ester production is generally insignificant, although significant ester formation has been found during malolactic fermentation in red wines, and ethyl acetate has been found to be produced in malt based beverages <ref name="peyer_review">[http://www.sciencedirect.com/science/article/pii/S0924224415300625 Lactic Acid Bacteria as Sensory Biomodulators for Fermented Cereal-Based Beverages. Lorenzo C. Peyer , Emanuele Zannini , Elke K. Arendt. 2016.]</ref><ref name="Tenhovirta_masters" />. Acetaldehyde produced from ''L. plantarum'' helps to produce pyranoanthocyanins that stabilize wine's red color <ref>[https://www.sciencedirect.com/science/article/pii/S0963996918302084 Acetaldehyde released by Lactobacillus plantarum enhances accumulation of pyranoanthocyanins in wine during malolactic fermentation. Shaoyang Wanga, Siyu Lic, Hongfei Zhaoa, Pan Gua, Yuqi Chena, Bolin Zhanga, Baoqing Zhu. 2018. https://doi.org/10.1016/j.foodres.2018.03.032]</ref>. Some strains may also produce fusel alcohols and other off-flavors. For example the referenced study found an accumulation of the fusel alcohol n-Porponal in the sample of ''L. reuteri'', and a small decrease of isovaleric acid coupled with a small increase of [https://en.wikipedia.org/wiki/Hexanoic_acid hexanoic acid] by ''L. brevis'', ''L. plantarum'', and ''L. reuteri'' (only 0.25-0.32 mg/L was found, and the flavor threshold of hexanoic acid is 5.4 mg/L <ref>[http://www.leffingwell.com/odorthre.htm Leffingwell & Associates website. Odor Thresholds. Retrieved 12/30/2015.]</ref>) <ref name="Peyer"></ref>. Heterofermentative species can also produce [[Tetrahydropyridine|tetrahydropyridines (THP)]], which is the cause of "mousy" off-flavors <ref name="Costello">[http://pubs.acs.org/doi/abs/10.1021/jf020341r Mousy Off-Flavor of Wine: Precursors and Biosynthesis of the Causative N-Heterocycles 2-Ethyltetrahydropyridine, 2-Acetyltetrahydropyridine, and 2-Acetyl-1-pyrroline by Lactobacillus hilgardii DSM 20176. Peter J. Costello and Paul A. Henschke. 2002.]</ref>. Aldehydes (2-methyl-1-propanal, 2-methyl-1-butanal, 3-methyl-1-butanal) and their associated non-fusel alcohols (2-methyl-1-propanol, 2-methyl-1-butanol, and 3-methyl-1-butanol) can be produced from amino acids such as leucine, isoleucine, and valine to form fruity flavors <ref name="peyer_review"></ref>. A few species, especially most strains of ''L. fermentum'', and some strains of ''L. delbrueckii subsp. bulgaricus'', can produce ropiness in the form of exopolysaccharides, similar to [[Pediococcus]] <ref name="peyer_review"></ref>.
[http://www.sciencedirect.com/science/article/pii/S0308814617302911#t0005 Dongmo et al. (2017)] found 56 volatile flavor compounds, including various esters, alcohols, ketones, aldehydes, acids, ethers compounds, sulfur compounds, heterocyclic compounds, phenols (including guaiacol and 4-vinylguaiacol), terpenes, lactones, and several unidentified compounds. Key compounds produced by ''Lactobacillus'' include acetaldehyde (thought to be a major flavor contributor to kettle soured beers <ref name="Peyer_2017" />), β-Damascenone, furaneol, phenylacetic acid, 2-phenylethanol, 4-vinylguaiacol, sotolon, methional, vanillin, acetic acid, nor-furaneol, guaiacol and ethyl 2-methylbutanoate. Acetaldehyde was the most impactful aroma compound found followed by propan-1-ol and γ-dodecalactone. Acetaldehyde was generally produced in much higher amounts (~23-64 µg/L) by the select strains of ''L. plantarum'', while ''L. amylolyticus'' and ''L. brevis'' produced only 1.5-3 µg/L. In fact, the levels of all of these compounds differed significantly based on the species and strain. The selected strains of ''L. brevis'' were associated as having worse aromas that were dominated by methional (cooked potatoes), acetic acid (vinegar), and nor-furaneol (caramel-like). The ''L. plantarum'' strains selected were identified as producing more positive aromas from compounds such as β-damascenone (apple/fruit juice), furaneol (strawberry), 2-phenylethanol (rose/caramel) and ethyl 2-methylbutanoate (citrus). Small but significant amounts of linalool and geraniol were also found, which are normally terpenes found in [[Hops|hops]]. Vanillan is formed from ferulic acid by some ''Lactobacillus'' species as well as ''Oenococcus oeni'' <ref name="Dongmo">[http://www.sciencedirect.com/science/article/pii/S0308814617302911 Key volatile aroma compounds of lactic acid fermented malt -based beverages – impact of lactic acid bacteria strains. Sorelle Nsogning Dongmo, Bertram Sacher, Hubert Kollmannsberger, Thomas Becker. 2017. doi:http://dx.doi.org/10.1016/j.foodchem.2017.02.091.]</ref>. Some strains of ''Lactobacillus'' can break down chlorogenic acids, which are esters found in plants, into their phenolic derivatives. For example, some strains of ''L. fermentum'', ''L. helveticus'', and ''L. reuteri'' were found to hydrolize chlorogenic acids into caffeic acid, which can then be converted into other phenols such as 4-vinylcatechol and 4-ethylcatechol by ''[[Brettanomyces#Phenol_Production|Brettanomyces]]'' <ref>[https://www.sciencedirect.com/science/article/pii/S0963996918303363 Site-specific hydrolysis of chlorogenic acids by selected Lactobacillus species. Elsa Anaheim Aguirre Santos, Andreas Schieber, Fabia nWeberFabian Weber. 2018. DOI: https://doi.org/10.1016/j.foodres.2018.04.052.]</ref>.
Some strains of ''L. plantarum'', ''L. brevis'', and ''Pediococcus pentosaceus'' can reduce hydroxycinnamic acids such as p-coumaric, caffeic, and ferulic acids, into their vinyl phenol derivatives, similar to POF+ ''Saccharomyces'' and ''Brettanomyces''. Furthermore, some strains of ''L. plantarum'' have been found to further reduce the vinyl phenols into ethyl phenols (the same phenolic compounds produced by ''Brettanomyces'') by excreting a protein enzyme called ''VprA''. So far ''L. plantarum'' is the only species of lactic acid yeast that has been identified as being capable of creating ethyl phenols from vinyl phenols, and only certain strains have the genetic capability to do this <ref>[http://aem.asm.org/content/early/2018/06/20/AEM.01064-18.abstract Ethylphenols formation by Lactobacillus plantarum: Identification of the enzyme involved in the reduction of vinylphenols. Laura Santamaría, Inés Reverón, Félix López de Felipe, Blanca de las Rivas and Rosario Muñoz. 2018. doi: 10.1128/AEM.01064-18.]</ref><ref>[https://www.ncbi.nlm.nih.gov/pubmed/25261518 Hydroxycinnamic acids used as external acceptors of electrons: an energetic advantage for strictly heterofermentative lactic acid bacteria. Filannino P, Gobbetti M, De Angelis M, Di Cagno R. 2014. DOI: 10.1128/AEM.02413-14.]</ref>.
The type of grain that the ''Lactobacillus'' is fermented in may also play a role in the types and amounts of secondary metabolites that are produced. One study compared volatile acids produced by a probiotic strain of ''L. plantarum'' (NCIMB 8826) when fermented in oats, barley, malted barley, and wheat. In oats, there was slight increase in oleic acid and linoleic acid and a decrease when fermented in wheat, barley, or malted barley. In malted barley, there were small increases in flavor active compounds such as furfural ("almond" flavor), 2-ethoxyethyl acetate and isoamyl alcohol, but little to none detected when fermented in oats, wheat, or unmalted barley. Acetic acid production was higher in barley and malted barley than it was in oats and wheat. Many other organic acids in the oats, wheat, barley, and malted barley were supposedly taken up by the ''L. plantarum'' during fermentation. In barley, there were trace amounts of new acids created that were not already in the barley itself <ref>[http://www.sciencedirect.com/science/article/pii/S0308814609004373 Volatile compounds produced by the probiotic strain Lactobacillus plantarum NCIMB 8826 in cereal-based substrates Ivan Salmeron, Pablo Fuciños, Dimitris Charalampopoulos, Severino S. Pandiella. 2009.]</ref>. Some species of ''Lactobacillus'', including ''L. lactis'' and ''L. plantarum'', produce diacetyl (which can be reduced to acetoin and 2,3-butanediol) as an intermediate metabolite from consuming sugar, citrate, and amino acids. However, citrate levels are rather low in malted barley (but higher in sorghum), and diacetyl production has been observed to be very low in barley and oat -based worts <ref name="peyer_review"></ref>.
Aging has a large impact on the aromas and flavors produced by ''Lactobacillus'' fermentation over time and is typically influenced by the temperature of the environment, oxygen exposure, and the byproducts of fermentation. Generally, fermentation has a positive effect on preserving some aroma and flavor compounds. Other compounds may change, causing aroma and flavor changes. For example, one study characterized wort freshly fermented with ''L. plantarum'' as "butter" and honey", and when aged as "yogurt" and "sour". In the same study, ''L. reuteri'' was characterized as "sour" when fresh, and "honey" and "pungent" when aged. ''L. brevis'' was characterized as "soy sauce" when fresh, and "yeasty" and "cider" when aged <ref name="Peyer"></ref>.
* The major off-flavor that some ''Lactobacillus'' strains might produce is acetaldehyde <ref name="heit_oxygen_LAB"></ref>. ''Saccharomyces'' will help to metabolize the acetaldehyde produced by ''Lactobacillus''.
===Foam Degradation===